Duan et al.13 applied the Gaussian mixture model (GMM) to extract features from pulmonary nodules from CT images. implemented the deep neural networks and classification as well as prepared the related figures and manuscript text. Thereafter, the FO-MPA parameters are applied to update the solutions of the current population. \end{aligned}$$, $$\begin{aligned} U_i(t+1)-U_i(t)=P.R\bigotimes S_i \end{aligned}$$, $$\begin{aligned} D ^{\delta } \left[ U_{i}(t+1)\right] =P.R\bigotimes S_i \end{aligned}$$, $$D^{\delta } \left[ {U_{i} (t + 1)} \right] = U_{i} (t + 1) + \sum\limits_{{k = 1}}^{m} {\frac{{( - 1)^{k} \Gamma (\delta + 1)U_{i} (t + 1 - k)}}{{\Gamma (k + 1)\Gamma (\delta - k + 1)}}} = P \cdot R \otimes S_{i} .$$, $$\begin{aligned} \begin{aligned} U(t+1)_{i}= - \sum _{k=1}^{m} \frac{(-1)^k\Gamma (\delta +1)U_{i}(t+1-k)}{\Gamma (k+1)\Gamma (\delta -k+1)} + P.R\bigotimes S_i. Future Gener. Multimedia Tools Appl. (14)-(15) are implemented in the first half of the agents that represent the exploitation. where \(fi_{i}\) represents the importance of feature I, while \(ni_{j}\) refers to the importance of node j. Accordingly, the prey position is upgraded based the following equations. Toaar, M., Ergen, B. We have used RMSprop optimizer for weight updates, cross entropy loss function and selected learning rate as 0.0001. The \(\delta\) symbol refers to the derivative order coefficient. It is also noted that both datasets contain a small number of positive COVID-19 images, and up to our knowledge, there is no other sufficient available published dataset for COVID-19. The prey follows Weibull distribution during discovering the search space to detect potential locations of its food. In general, MPA is a meta-heuristic technique that simulates the behavior of the prey and predator in nature37. International Conference on Machine Learning647655 (2014). 35, 1831 (2017). The . To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. Biocybern. While55 used different CNN structures. Generally, the most stable algorithms On dataset 1 are WOA, SCA, HGSO, FO-MPA, and SGA, respectively. The model was developed using Keras library47 with Tensorflow backend48. (14)(15) to emulate the motion of the first half of the population (prey) and Eqs. For diagnosing COVID-19, the RT-PCR (real-time polymerase chain reaction) is a standard diagnostic test, but, it can be considered as a time-consuming test, more so, it also suffers from false negative diagnosing4. Huang, P. et al. Med. Google Scholar. The evaluation showed that the RDFS improved SVM robustness against reconstruction kernel and slice thickness. 9, 674 (2020). The parameters of each algorithm are set according to the default values. For example, as our input image has the shape \(224 \times 224 \times 3\), Nasnet26 produces 487 K features, Resnet25 and Xception29 produce about 100 K features and Mobilenet27 produces 50 K features, while FO-MPA produces 130 and 86 features for both dataset1 and dataset 2, respectively. Although convolutional neural networks (CNNs) is considered the current state-of-the-art image classification technique, it needs massive computational cost for deployment and training. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. Isolation and characterization of a bat sars-like coronavirus that uses the ace2 receptor. All data used in this paper is available online in the repository, [https://github.com/ieee8023/covid-chestxray-dataset], [https://stanfordmlgroup.github.io/projects/chexnet], [https://www.kaggle.com/paultimothymooney/chest-xray-pneumonia] and [https://www.sirm.org/en/category/articles/covid-19-database/]. Nature 503, 535538 (2013). Also, some image transformations were applied, such as rotation, horizontal flip, and scaling. 2 (left). 92, 103662. https://doi.org/10.1016/j.engappai.2020.103662 (2020). In Smart Intelligent Computing and Applications, 305313 (Springer, 2019). Correspondence to The test accuracy obtained for the model was 98%. They shared some parameters, such as the total number of iterations and the number of agents which were set to 20 and 15, respectively. In Table4, for Dataset 1, the proposed FO-MPA approach achieved the highest accuracy in the best and mean measures, as it reached 98.7%, and 97.2% of correctly classified samples, respectively. Nguyen, L.D., Lin, D., Lin, Z. . So, there might be sometimes some conflict issues regarding the features vector file types or issues related to storage capacity and file transferring. For both datasets, the Covid19 images were collected from patients with ages ranging from 40-84 from both genders. Radiomics: extracting more information from medical images using advanced feature analysis. Ge, X.-Y. Background The large volume and suboptimal image quality of portable chest X-rays (CXRs) as a result of the COVID-19 pandemic could post significant challenges for radiologists and frontline physicians. The code of the proposed approach is also available via the following link [https://drive.google.com/file/d/1-oK-eeEgdCMCnykH364IkAK3opmqa9Rvasx/view?usp=sharing]. For the exploration stage, the weibull distribution has been applied rather than Brownian to bost the performance of the predator in stage 2 and the prey velocity in stage 1 based on the following formula: Where k, and \(\zeta\) are the scale and shape parameters. Based on Standard Deviation measure (STD), the most stable algorithms were SCA, SGA, BPSO, and bGWO, respectively. Image Classification With ResNet50 Convolution Neural Network (CNN) on Covid-19 Radiography | by Emmanuella Anggi | The Startup | Medium 500 Apologies, but something went wrong on our end.. Aiming at the problems of poor attention to existing translation models, the insufficient ability of key transfer and generation, insufficient quality of generated images, and lack of detailed features, this paper conducts research on lung medical image translation and lung image classification based on . 2020-09-21 . Although the performance of the MPA and bGWO was slightly similar, the performance of SGA and WOA were the worst in both max and min measures. Chong, D. Y. et al. There are three main parameters for pooling, Filter size, Stride, and Max pool. Table2 depicts the variation in morphology of the image, lighting, structure, black spaces, shape, and zoom level among the same dataset, as well as with the other dataset. Eng. Credit: NIAID-RML Harris hawks optimization: algorithm and applications. The proposed IFM approach is summarized as follows: Extracting deep features from Inception, where about 51 K features were extracted. While no feature selection was applied to select best features or to reduce model complexity. 11, 243258 (2007). Wish you all a very happy new year ! Figure7 shows the most recent published works as in54,55,56,57 and44 on both dataset 1 and dataset 2. where \(REfi_{i}\) represents the importance of feature i that were calculated from all trees, where \(normfi_{ij}\) is the normalized feature importance for feature i in tree j, also T is the total number of trees. (15) can be reformulated to meet the special case of GL definition of Eq. Automated detection of alzheimers disease using brain mri imagesa study with various feature extraction techniques. Accordingly, the FC is an efficient tool for enhancing the performance of the meta-heuristic algorithms by considering the memory perspective during updating the solutions. Article The second one is based on Matlab, where the feature selection part (FO-MPA algorithm) was performed. Jcs: An explainable covid-19 diagnosis system by joint classification and segmentation. On the second dataset, dataset 2 (Fig. These images have been further used for the classification of COVID-19 and non-COVID-19 images using ResNet50 and AlexNet convolutional neural network (CNN) models. These datasets contain hundreds of frontal view X-rays and considered the largest public resource for COVID-19 image data. To obtain With the help of numerous algorithms in AI, modern COVID-19 cases can be detected and managed in a classified framework. 40, 2339 (2020). In this paper, filters of size 2, besides a stride of 2 and \(2 \times 2\) as Max pool, were adopted. Imag. The proposed IMF approach is employed to select only relevant and eliminate unnecessary features. The first one is based on Python, where the deep neural network architecture (Inception) was built and the feature extraction part was performed. Transmission scenarios for middle east respiratory syndrome coronavirus (mers-cov) and how to tell them apart. While the second half of the agents perform the following equations. A combination of fractional-order and marine predators algorithm (FO-MPA) is considered an integration among a robust tool in mathematics named fractional-order calculus (FO). MATH In the last two decades, two famous types of coronaviruses SARS-CoV and MERS-CoV had been reported in 2003 and 2012, in China, and Saudi Arabia, respectively3. implemented the FO-MPA swarm optimization and prepared the related figures and manuscript text. Keywords - Journal. He, K., Zhang, X., Ren, S. & Sun, J. Scientific Reports Volume 10, Issue 1, Pages - Publisher. . In 2018 IEEE International Symposium on Circuits and Systems (ISCAS), 15 (IEEE, 2018). They used K-Nearest Neighbor (kNN) to classify x-ray images collected from Montgomery dataset, and it showed good performances. In the meantime, to ensure continued support, we are displaying the site without styles Adv. Howard, A.G. etal. Refresh the page, check Medium 's site status, or find something interesting. The main contributions of this study are elaborated as follows: Propose an efficient hybrid classification approach for COVID-19 using a combination of CNN and an improved swarm-based feature selection algorithm. Biomed. & Cmert, Z. }\delta (1-\delta ) U_{i}(t-1)+ \frac{1}{3! SharifRazavian, A., Azizpour, H., Sullivan, J. 115, 256269 (2011). The largest features were selected by SMA and SGA, respectively. The different proposed models will be trained with three-class balanced dataset which consists of 3000 images, 1000 images for each class. Going deeper with convolutions. In Future of Information and Communication Conference, 604620 (Springer, 2020). Springer Science and Business Media LLC Online. The proposed cascaded system is proposed to segment the lung, detect, localize, and quantify COVID-19 infections from computed tomography images, which can reliably localize infections of various shapes and sizes, especially small infection regions, which are rarely considered in recent studies. The MPA starts with the initialization phase and then passing by other three phases with respect to the rational velocity among the prey and the predator. Table4 show classification accuracy of FO-MPA compared to other feature selection algorithms, where the best, mean, and STD for classification accuracy were calculated for each one, besides time consumption and the number of selected features (SF). Comput. Deep learning plays an important role in COVID-19 images diagnosis. So some statistical operations have been added to exclude irrelevant and noisy features, and by making it more computationally efficient and stable, they are summarized as follows: Chi-square is applied to remove the features which have a high correlation values by computing the dependence between them. Inf. In this paper, we propose an improved hybrid classification approach for COVID-19 images by combining the strengths of CNNs (using a powerful architecture called Inception) to extract features and . Hashim, F. A., Houssein, E. H., Mabrouk, M. S., Al-Atabany, W. & Mirjalili, S. Henry gas solubility optimization: a novel physics-based algorithm. Al-qaness, M. A., Ewees, A. I am passionate about leveraging the power of data to solve real-world problems. Corona Virus lung infected X-Ray Images accessible by Kaggle a complete 590 images, which classified in 2 classes: typical and Covid-19. For each of these three categories, there is a number of patients and for each of them, there is a number of CT scan images correspondingly. Experimental results have shown that the proposed Fuzzy Gabor-CNN algorithm attains highest accuracy, Precision, Recall and F1-score when compared to existing feature extraction and classification techniques. The conference was held virtually due to the COVID-19 pandemic. Eurosurveillance 18, 20503 (2013). Zhu, H., He, H., Xu, J., Fang, Q. 79, 18839 (2020). As a result, the obtained outcomes outperformed previous works in terms of the models general performance measure. IEEE Signal Process. In this experiment, the selected features by FO-MPA were classified using KNN. Recombinant: A process in which the genomes of two SARS-CoV-2 variants (that have infected a person at the same time) combine during the viral replication process to form a new variant that is different . With accounting the first four previous events (\(m=4\)) from the memory data with derivative order \(\delta\), the position of prey can be modified as follow; Second: Adjusting \(R_B\) random parameter based on weibull distribution. Initialize solutions for the prey and predator. Tree based classifier are the most popular method to calculate feature importance to improve the classification since they have high accuracy, robustness, and simple38. Deep-learning artificial intelligent (AI) methods have the potential to help improve diagnostic efficiency and accuracy for reading portable CXRs. Propose a novel robust optimizer called Fractional-order Marine Predators Algorithm (FO-MPA) to select efficiently the huge feature vector produced from the CNN. COVID-19 image classification using deep learning: Advances, challenges and opportunities COVID-19 image classification using deep learning: Advances, challenges and opportunities Comput Biol Med. Covid-19 Classification Using Deep Learning in Chest X-Ray Images Abstract: Covid-19 virus, which has emerged in the Republic of China in an undetermined cause, has affected the whole world quickly. Image segmentation is a necessary image processing task that applied to discriminate region of interests (ROIs) from the area of outsides. Mutation: A mutation refers to a single change in a virus's genome (genetic code).Mutations happen frequently, but only sometimes change the characteristics of the virus. CAS volume10, Articlenumber:15364 (2020) Mobilenets: Efficient convolutional neural networks for mobile vision applications. However, some of the extracted features by CNN might not be sufficient, which may affect negatively the quality of the classification images. and JavaScript. It classifies the chest X-ray images into three categories that includes Covid-19, Pneumonia and normal. https://doi.org/10.1155/2018/3052852 (2018). Imaging Syst. arXiv preprint arXiv:2003.11597 (2020). A. et al. 121, 103792 (2020). A., Fan, H. & Abd ElAziz, M. Optimization method for forecasting confirmed cases of covid-19 in china. Figure6 shows a comparison between our FO-MPA approach and other CNN architectures. (22) can be written as follows: By taking into account the early mentioned relation in Eq. & Carlsson, S. Cnn features off-the-shelf: an astounding baseline for recognition. Thank you for visiting nature.com. Propose similarity regularization for improving C. 101, 646667 (2019). The HGSO also was ranked last. The results indicate that all CNN-based architectures outperform the ViT-based architecture in the binary classification of COVID-19 using CT images. Stage 2: The prey/predator in this stage begin exploiting the best location that detects for their foods. The algorithm combines the assessment of image quality, digital image processing and deep learning for segmentation of the lung tissues and their classification. A. Computational image analysis techniques play a vital role in disease treatment and diagnosis. <span> <h5>Background</h5> <p>The COVID19 pandemic has precipitated global apprehensions about increased fatalities and raised concerns about gaps in healthcare . Detection of lung cancer on chest ct images using minimum redundancy maximum relevance feature selection method with convolutional neural networks. COVID-19 image classification using deep features and fractional-order marine predators algorithm Authors. It achieves a Dice score of 0.9923 for segmentation, and classification accuracies of 0. COVID-19-X-Ray-Classification Utilizing Deep Learning to detect COVID-19 and Viral Pneumonia from x-ray images Research Publication: https://dl.acm.org/doi/10.1145/3431804 Datasets used: COVID-19 Radiography Database COVID-19 10000 Images Related Research Papers: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7187882/ Furthermore, deep learning using CNN is considered one of the best choices in medical imaging applications20, especially classification. Softw. 42, 6088 (2017). 95, 5167 (2016). Then, using an enhanced version of Marine Predators Algorithm to select only relevant features. For this motivation, we utilize the FC concept with the MPA algorithm to boost the second step of the standard version of the algorithm. So, transfer learning is applied by transferring weights that were already learned and reserved into the structure of the pre-trained model, such as Inception, in this paper. Also, it has killed more than 376,000 (up to 2 June 2020) [Coronavirus disease (COVID-2019) situation reports: (https://www.who.int/emergencies/diseases/novel-coronavirus-2019/situation-reports/)]. Dhanachandra and Chanu35 proposed a hybrid method of dynamic PSO and fuzzy c-means to segment two types of medical images, MRI and synthetic images. The MCA-based model is used to process decomposed images for further classification with efficient storage. Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Furthermore, using few hundreds of images to build then train Inception is considered challenging because deep neural networks need large images numbers to work efficiently and produce efficient features. For Dataset 2, FO-MPA showed acceptable (not the best) performance, as it achieved slightly similar results to the first and second ranked algorithm (i.e., MPA and SMA) on mean, best, max, and STD measures. Decis. 152, 113377 (2020). However, the modern name is tenggiling.In Javanese it is terenggiling; and in the Philippine languages, it is goling, tanggiling, or balintong (with the same meaning).. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. arXiv preprint arXiv:1704.04861 (2017). Acharya, U. R. et al. In57, ResNet-50 CNN has been applied after applying horizontal flipping, random rotation, random zooming, random lighting, and random wrapping on raw images. \delta U_{i}(t)+ \frac{1}{2! Objective: Lung image classification-assisted diagnosis has a large application market. (8) can be remodeled as below: where \(D^1[x(t)]\) represents the difference between the two followed events. Knowl. In order to normalize the values between 0 and 1 by dividing by the sum of all feature importance values, as in Eq. According to the best measure, the FO-MPA performed similarly to the HHO algorithm, followed by SMA, HGSO, and SCA, respectively. Li et al.36 proposed an FS method using a discrete artificial bee colony (ABC) to improve the classification of Parkinsons disease. How- individual class performance. (9) as follows. Remainder sections are organized as follows: Material and methods sectionpresents the methodology and the techniques used in this work including model structure and description. Tensorflow: Large-scale machine learning on heterogeneous systems, 2015. where \(R\in [0,1]\) is a random vector drawn from a uniform distribution and \(P=0.5\) is a constant number. For instance,\(1\times 1\) conv. We are hiring! The focus of this study is to evaluate and examine a set of deep learning transfer learning techniques applied to chest radiograph images for the classification of COVID-19, normal (healthy), and pneumonia. In this work, the MPA is enhanced by fractional calculus memory feature, as a result, Fractional-order Marine Predators Algorithm (FO-MPA) is introduced. Syst. The memory properties of Fc calculus makes it applicable to the fields that required non-locality and memory effect. Moreover, from Table4, it can be seen that the proposed FO-MPA provides better results in terms of F-Score, as it has the highest value in datatset1 and datatset2 which are 0.9821 and 0.99079, respectively. Med. arXiv preprint arXiv:1409.1556 (2014). In our experiment, we randomly split the data into 70%, 10%, and 20% for training, validation, and testing sets, respectively. }, \end{aligned}$$, $$\begin{aligned} D^{\delta }[U(t)]=\frac{1}{T^\delta }\sum _{k=0}^{m} \frac{(-1)^k\Gamma (\delta +1)U(t-kT)}{\Gamma (k+1)\Gamma (\delta -k+1)} \end{aligned}$$, $$\begin{aligned} D^1[U(t)]=U(t+1)-U(t) \end{aligned}$$, $$\begin{aligned} U=Lower+rand_1\times (Upper - Lower ) \end{aligned}$$, $$\begin{aligned} Elite=\left[ \begin{array}{cccc} U_{11}^1&{}U_{12}^1&{}\ldots &{}U_{1d}^1\\ U_{21}^1&{}U_{22}^1&{}\ldots &{}U_{2d}^1\\ \ldots &{}\ldots &{}\ldots &{}\ldots \\ U_{n1}^1&{}U_{n2}^1&{}\ldots &{}U_{nd}^1\\ \end{array}\right] , \, U=\left[ \begin{array}{cccc} U_{11}&{}U_{12}&{}\ldots &{}U_{1d}\\ U_{21}&{}U_{22}&{}\ldots &{}U_{2d}\\ \ldots &{}\ldots &{}\ldots &{}\ldots \\ U_{n1}&{}U_{n2}&{}\ldots &{}U_{nd}\\ \end{array}\right] , \, \end{aligned}$$, $$\begin{aligned} S_i&= {} R_B \bigotimes (Elite_i-R_B\bigotimes U_i), i=1,2,\ldots ,n \end{aligned}$$, $$\begin{aligned} U_i&= {} U_i+P.R\bigotimes S_i \end{aligned}$$, \(\frac{1}{3}t_{max}< t< \frac{2}{3}t_{max}\), $$\begin{aligned} S_i&= {} R_L \bigotimes (Elite_i-R_L\bigotimes U_i), i=1,2,\ldots ,n/2 \end{aligned}$$, $$\begin{aligned} S_i&= {} R_B \bigotimes (R_B \bigotimes Elite_i- U_i), i=1,2,\ldots ,n/2 \end{aligned}$$, $$\begin{aligned} U_i&= {} Elite_i+P.CF\bigotimes S_i,\, CF= \left( 1-\frac{t}{t_{max}} \right) ^{\left(2\frac{t}{t_{max}}\right) } \end{aligned}$$, $$\begin{aligned} S_i&= {} R_L \bigotimes (R_L \bigotimes Elite_i- U_i), i=1,2,\ldots ,n \end{aligned}$$, $$\begin{aligned} U_i&= {} Elite_i+P.CF\bigotimes S_i,\, CF= \left( 1-\frac{t}{t_{max}}\right) ^{\left(2\frac{t}{t_{max}} \right) } \end{aligned}$$, $$\begin{aligned} U_i=\left\{ \begin{array}{ll} U_i+CF [U_{min}+R \bigotimes (U_{max}-U_{min})]\bigotimes W &{} r_5 < FAD \\ U_i+[FAD(1-r)+r](U_{r1}-U_{r2}) &{} r_5 > FAD\\ \end{array}\right. Also, because COVID-19 is a virus, distinguish COVID-19 from common viral . They were manually aggregated from various web based repositories into a machine learning (ML) friendly format with accompanying data loader code. This algorithm is tested over a global optimization problem. Sci. & Cao, J. Feature selection based on gaussian mixture model clustering for the classification of pulmonary nodules based on computed tomography. Google Scholar. wrote the intro, related works and prepare results. As Inception examines all X-ray images over and over again in each epoch during the training, these rapid ups and downs are slowly minimized in the later part of the training. Our method is able to classify pneumonia from COVID-19 and visualize an abnormal area at the same time. Diagnosis of parkinsons disease with a hybrid feature selection algorithm based on a discrete artificial bee colony. Coronavirus disease (Covid-19) is an infectious disease that attacks the respiratory area caused by the severe acute . EMRes-50 model . The authors declare no competing interests. Whereas the worst one was SMA algorithm. Med. Authors Taking into consideration the current spread of COVID-19, we believe that these techniques can be applied as a computer-aided tool for diagnosing this virus. Accordingly, that reflects on efficient usage of memory, and less resource consumption.
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